Protein Folding — HP Lattice Model

Hydrophobic-Polar model: H residues maximize buried contacts

Simulation

sequence: ——
HP model (Lau & Dill 1989):
E = −ε·(H-H contacts)
H residues: hydrophobic (black)
P residues: polar (white)
MCSMC: pivot/crankshaft moves
Funnel landscape drives folding
Energy E:0
H-H contacts:0
MC steps:0
Best E found:0
Acceptance: