Haplotype Block Structure
LD-defined haplotype blocks, tag SNP selection, and block visualization in a simulated population
Parameters
Individuals:
80
SNPs:
30
Block size (avg):
5
SNPs
LD threshold (r²):
0.70
Generate Population
Select Tag SNPs
Blocks detected:
—
Tag SNPs needed:
—
Coverage:
—
%
Avg block size:
—
SNPs
Haplotype Matrix (individuals × SNPs)
Block Structure & Tag SNPs